Basic Information
Locus ID:
SOLCI002282700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2183 | 2897 | 5443 | + | SOLCI002282700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 95,901.64 Da | 33.11 | 103.11 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 627 | 659 | 3.5E-13 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 455 | 484 | 1.8E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 341 | 370 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 309 | 335 | 1.3E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 410 | 430 | 0.99 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 237 | 266 | 7.9E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 171 | 210 | 7.1E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 273 | 300 | 0.069 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 739 | 784 | 1.2E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 492 | 540 | 3.5E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 566 | 610 | 6.3E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 666 | 715 | 1.1E-16 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 237 | 332 | 1.67E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 219 | 300 | 1.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 625 | 694 | 1.8E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 306 | 399 | 1.4E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 490 | 554 | 1.2E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 555 | 624 | 8.0E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 77 | 218 | 2.1E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 695 | 825 | 3.2E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 400 | 489 | 5.2E-10 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 496 | 527 | 3.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 739 | 772 | 2.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 529 | 562 | 2.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 601 | 633 | 1.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 236 | 267 | 8.6E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 669 | 702 | 1.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 566 | 598 | 1.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 273 | 303 | 0.0024 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 341 | 374 | 2.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 170 | 199 | 4.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 634 | 667 | 1.8E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 460 | 489 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 201 | 234 | 0.002 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 704 | 737 | 3.2E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 309 | 338 | 5.2E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 632 | 666 | 13.42765 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 163 | 197 | 8.53891 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 457 | 491 | 10.347525 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 199 | 233 | 8.53891 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | 11.213468 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 667 | 701 | 11.794416 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 562 | 596 | 8.834866 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 492 | 526 | 10.785976 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 737 | 771 | 11.520384 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 702 | 736 | 12.791895 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | 11.060009 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 234 | 268 | 11.388848 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 527 | 561 | 10.654441 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 597 | 631 | 10.281757 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08310.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_010319319.1 | putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Solanum lycopersicum] | 0 |
| P0C8Q6 | Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2BLR0 | Pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Solanum chilense OX=4083 GN=EJD97_008051 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18500 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038576 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202760 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14693, Sbi_jg55458, Sbi_jg55459 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26020 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012506 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78064, Sgl80568 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225040 |
| Apiaceae | Apium graveolens | 1 | Ag8G01964 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712455 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08846 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015588m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g027900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0535 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0558 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2872 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16515 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0377900, gene-QOZ80_5BG0425020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0662080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010760, gene-QYE76_010824 |
| Poaceae | Oryza coarctata | 1 | Oco10G006600 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g24930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K281200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G014780, Chr12G014790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G330600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG020010, gene_TRIDC7BG010020 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G161600.1.cds1, TraesCS7B02G066700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb009120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1490, evm.TU.LG26.176 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.336 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15193 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19832 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-285 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.78 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21430 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17284 |
| Salicaceae | Populus euphratica | 1 | populus_peu13919 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613765 |
| Solanaceae | Solanum chilense | 1 | SOLCI002282700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016104 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20690_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0844 |