Basic Information
Locus ID:
SOLCI002275600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold21764 | 1868 | 3247 | - | SOLCI002275600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 50,173.24 Da | 30.20 | 88.91 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 187 | 207 | 0.48 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 327 | 362 | 2.7E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 60 | 6.8E-6 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 328 | 430 | 1.56E-15 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 311 | 1.97E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 324 | 449 | 4.1E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 323 | 1.3E-83 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 0.15 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 233 | 255 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 256 | 279 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 208 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 433 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 158 | 100.0 | IPR003591 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_010315276.1 | receptor protein kinase TMK1-like isoform X2 [Solanum lycopersicum] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AJ30 | LRRNT_2 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008028 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology