Basic Information
Locus ID:
SOLCI002249300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
ICP0-binding domain of Ubiquitin-specific protease 7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2161 | 3027 | 11604 | - | SOLCI002249300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 83,114.65 Da | 38.44 | 93.29 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 580 | 704 | 1.3369E-29 | IPR002083 |
| Pfam | PF00917 | MATH domain | 585 | 704 | 1.1E-14 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 102 | 294 | 3.6E-41 | IPR024729 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 358 | 540 | 7.2E-43 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 576 | 704 | 3.76E-34 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 577 | 705 | 6.6E-40 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 419 | 536 | 1.6E-34 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 163 | 279 | 2.8E-36 | - |
| SMART | SM00061 | math_3 | 580 | 684 | 2.7E-12 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 578 | 703 | 33.917206 | IPR002083 |
| Coils | Coil | Coil | 22 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_049405503.1 | ubiquitin C-terminal hydrolase 12-like [Solanum stenotomum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BQY3 | MATH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007923 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 4 | pistato.v30052220, pistato.v30053190, pistato.v30054840 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00610 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17586 |
| Poaceae | Oryza coarctata | 1 | Oco21G007500 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132640125, gene-LOC132640126, gene-LOC132640127 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002249300 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00200.v3.1 |