Basic Information
Locus ID:
SOLCI002243500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2156 | 22896 | 30530 | - | SOLCI002243500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 98,014.27 Da | 53.53 | 78.31 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 657 | 691 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 740 | 775 | 0.0021 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 88 | 339 | 1.08E-17 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 567 | 877 | 2.09E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 544 | 880 | 5.3E-122 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 89 | 343 | 1.2E-23 | - |
| SMART | SM00320 | WD40_4 | 784 | 823 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 691 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 737 | 775 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 839 | 878 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 563 | 598 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 733 | 0.68 | IPR001680 |
| SMART | SM00220 | serkin_6 | 47 | 336 | 0.008 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 744 | 777 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 744 | 777 | 10.337415 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 336 | 10.548924 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 658 | 700 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 658 | 695 | 10.732868 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 762 | 776 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 678 | 692 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 635 | 649 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 678 | 692 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 762 | 776 | 2.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 191 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_004244232.1 | protein SPA1-RELATED 4-like isoform X1 [Solanum lycopersicum] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BN14 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007907 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology