Basic Information
Locus ID:
SOLCI002240200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2154 | 36164 | 43011 | + | SOLCI002240200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 92,203.73 Da | 44.26 | 87.05 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 549 | 682 | 7.34366E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 703 | 747 | 1.8E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 551 | 681 | 7.9E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 511 | 751 | 6.49E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 683 | 769 | 2.4E-94 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 510 | 682 | 2.4E-94 | IPR027417 |
| SMART | SM00382 | AAA_5 | 547 | 684 | 3.1E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 654 | 673 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 222 | - | - |
| Coils | Coil | Coil | 734 | 762 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004234206.1 | uncharacterized protein LOC101260609 [Solanum lycopersicum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BKN9 | AAA domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007886 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology