Basic Information
Locus ID:
SOLCI002207600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2131 | 55410 | 57936 | - | SOLCI002207600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 35,288.82 Da | 49.49 | 89.90 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 154 | 9.03E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 58 | 2.75E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 193 | 5.5E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 46 | 3.2E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 51 | 9.92138 | IPR001810 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 230 | 241 | - | IPR017900 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_004228734.2 | F-box protein SKIP28 [Solanum lycopersicum] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BNE5 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology