Basic Information
Locus ID:
SOLCI002184900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2117 | 76052 | 76444 | - | SOLCI002184900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 14,201.42 Da | 35.06 | 98.23 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 68 | 111 | 5.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 117 | 4.54E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 119 | 5.1E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 111 | 11.81064 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049367342.1 | RING-H2 finger protein ATL39-like [Solanum verrucosum] | 0 |
| Q940Q4 | RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BQZ3 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_007636 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 2 | Ftri18G10027, Ftri1G16177 |
| Solanaceae | Solanum chilense | 1 | SOLCI002184900 |