Basic Information
Locus ID:
SOLCI002172800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold211 | 29614 | 34776 | + | SOLCI002172800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 41,516.04 Da | 46.64 | 84.37 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 149 | 198 | 9.56598E-32 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 341 | 383 | 1.82259E-23 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.42373E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 345 | 380 | 1.9E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 155 | 193 | 3.1E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.9E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 265 | 320 | 5.5E-23 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 205 | 2.58E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 325 | 388 | 2.84E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 261 | 326 | 1.57E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 80 | 2.76E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-28 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 254 | 321 | 4.1E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 148 | 198 | 4.4E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 337 | 384 | 1.3E-23 | - |
| SMART | SM00165 | uba_6 | 155 | 195 | 1.9E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 345 | 382 | 4.0E-9 | IPR015940 |
| SMART | SM00727 | CBM | 263 | 306 | 1.0E-8 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.2E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 387 | 3.8E-117 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 19.411978 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 342 | 383 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 153 | 196 | 12.691477 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 371 | 386 | 1.6E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 356 | 370 | 1.6E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 339 | 355 | 1.6E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 291 | 313 | 1.6E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 131 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015067228.1 | ubiquitin receptor RAD23c isoform X2 [Solanum pennellii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2CIF2 | Ubiquitin receptor RAD23 OS=Solanum chilense OX=4083 GN=EJD97_007573 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology