halophFGD

Basic Information

Locus ID: SOLCI002142100

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold20912	2422	4299	-	SOLCI002142100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.15	55,913.22 Da	45.61	72.87	-0.84

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	350	469	2.4E-29	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	183	218	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	110	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	278	302	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	117	134	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_019067619.1	uncharacterized protein LOC109119500 [Solanum lycopersicum]	0
TrEMBL	A0A6N2APS7	DUF4283 domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_007491 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933