Basic Information
Locus ID:
SOLCI002138300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box kelch-repeat protein At1g80440-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold20896 | 2022 | 3107 | + | SOLCI002138300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 40,619.95 Da | 34.14 | 82.85 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 42 | 7.8E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 111 | 154 | 1.3E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 171 | 203 | 2.3E-4 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 77 | 335 | 1.44E-38 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 56 | 1.96E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 71 | 360 | 3.9E-32 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 56 | 3.9E-5 | - |
| SMART | SM00612 | kelc_smart | 119 | 167 | 0.015 | IPR006652 |
| SMART | SM00612 | kelc_smart | 170 | 217 | 0.0044 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_015069143.1 | F-box/kelch-repeat protein At1g80440-like [Solanum pennellii] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AHW5 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007486 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology