Basic Information
Locus ID:
SOLCI002093400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold20639 | 1228 | 2385 | - | SOLCI002093400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 43,091.38 Da | 88.11 | 57.74 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 179 | 220 | 5.10373E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 3 | 32 | 2.6E-12 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 246 | 368 | 8.1E-41 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 178 | 220 | 1.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 225 | 1.46E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 226 | 5.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 219 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 220 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_004240370.1 | probable E3 ubiquitin-protein ligase RHC2A [Solanum lycopersicum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AHI8 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_007327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology