Basic Information
Locus ID:
SOLCI002062100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold20443 | 1584 | 3607 | + | SOLCI002062100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 11,224.39 Da | 55.22 | 64.04 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 20 | 92 | 2.87889E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 21 | 91 | 2.4E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 5 | 96 | 2.83E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 96 | 1.6E-39 | - |
| SMART | SM00213 | ubq_7 | 21 | 92 | 7.1E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 96 | 15.492407 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_004244095.1 | small ubiquitin-related modifier 1 [Solanum lycopersicum] | 0 |
| Q9FLP6 | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AQ49 | Small ubiquitin-related modifier OS=Solanum chilense OX=4083 GN=EJD97_007206 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology