Basic Information
Locus ID:
SOLCI002060600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold20432 | 3128 | 4021 | - | SOLCI002060600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 18,716.95 Da | 25.78 | 96.75 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 58 | 134 | 4.2E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 5 | 47 | 2.5E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 53 | 1.02E-8 | IPR036047 |
| SMART | SM00256 | fbox_2 | 7 | 47 | 0.0014 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 33 | 149 | 6.9E-11 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_047261789.1 | F-box/kelch-repeat protein At3g23880-like [Capsicum annuum] | 0 |
| TrEMBL | A0A6N2AJR6 | F-box domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_007194 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |