Basic Information
Locus ID:
SOLCI002051000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2039 | 18942 | 20084 | - | SOLCI002051000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 44,484.24 Da | 48.66 | 89.24 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 52 | 2.2E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 215 | 360 | 4.0E-7 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 133 | 4.19E-9 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 109 | 353 | 3.92E-9 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 54 | 6.1E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 140 | 360 | 1.4E-6 | IPR015915 |
| SMART | SM00256 | fbox_2 | 18 | 58 | 4.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 108 | 325 | 1.0E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 58 | 10.557245 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_019224536.1 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana attenuata] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6N2BRQ6 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007153 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |