Basic Information
Locus ID:
SOLCI002039300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2032 | 16011 | 19857 | - | SOLCI002039300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 65,143.38 Da | 38.91 | 99.57 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 8.12825E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 299 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 515 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 345 | 6.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 557 | 1.2E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 260 | 557 | 1.97E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 572 | 5.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 258 | 520 | 4.0E-55 | IPR015943 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 6.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 1.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 8.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.65 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 2.0E-6 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 302 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 524 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 567 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 12.130133 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 10.599167 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 7.754871 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 502 | 516 | 5.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015059750.1 | WD repeat-containing protein 26 homolog [Solanum pennellii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BSN6 | WD repeat-containing protein 26-like OS=Solanum chilense OX=4083 GN=EJD97_007085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology