Basic Information
Locus ID:
SOLCI002003500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2009 | 25483 | 37250 | - | SOLCI002003500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 145,408.63 Da | 50.97 | 77.87 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1164 | 1272 | 1.91732E-51 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 579 | 901 | 3.94316E-84 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 597 | 978 | 2.7E-65 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1164 | 1262 | 8.4E-15 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1017 | 1054 | 1.4E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 563 | 901 | 5.84E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 910 | 1319 | 2.77E-54 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1014 | 1066 | 1.83E-12 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 672 | 757 | 5.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 551 | 642 | 2.3E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 916 | 1320 | 4.2E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 775 | 902 | 5.5E-28 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1002 | 1068 | 1.0E-11 | IPR013083 |
| SMART | SM00487 | ultradead3 | 575 | 878 | 3.9E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 1017 | 1055 | 6.9E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1179 | 1262 | 2.4E-18 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1156 | 1315 | 14.641831 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 594 | 863 | 12.854284 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1017 | 1054 | 10.910707 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1032 | 1041 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1128 | 1159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 109 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015070516.1 | helicase-like transcription factor CHR28 isoform X1 [Solanum pennellii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BM87 | Helicase-like transcription factor CHR28 OS=Solanum chilense OX=4083 GN=EJD97_006969 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology