Basic Information
Locus ID:
SOLCI002001200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2008 | 61533 | 62795 | + | SOLCI002001200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 47,652.41 Da | 43.88 | 109.76 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 55 | 2.08288E-19 | - |
| Pfam | PF04564 | U-box domain | 6 | 78 | 1.4E-15 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 78 | 1.7E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 104 | 326 | 7.4E-11 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 102 | 398 | 8.0E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 84 | 8.7E-23 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 77 | 3.0E-20 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 84 | 25.185474 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_004241334.1 | E3 ubiquitin-protein ligase PUB24-like [Solanum lycopersicum] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BSW5 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_006950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology