Basic Information
Locus ID:
SOLCI001954200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1981 | 45055 | 55430 | - | SOLCI001954200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 170,464.20 Da | 40.07 | 106.66 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 329 | 616 | 4.16962E-101 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 968 | 1262 | 5.31128E-96 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1284 | 1504 | 8.16108E-128 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 642 | 842 | 1.56241E-103 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 332 | 596 | 2.3E-31 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 970 | 1212 | 6.3E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1303 | 1451 | 5.7E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 661 | 794 | 1.8E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1276 | 1516 | 5.54E-68 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 637 | 864 | 4.77E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 317 | 624 | 2.75E-41 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 967 | 1267 | 1.7E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 625 | 3.7E-57 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 636 | 870 | 3.6E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1270 | 1521 | 9.3E-83 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 929 | 1268 | 3.0E-62 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1312 | 1497 | 1.7E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 669 | 842 | 4.3E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 970 | 1240 | 36.413712 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1286 | 1520 | 18.067358 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 642 | 865 | 22.635828 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 331 | 608 | 38.0261 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 767 | 781 | - | IPR017871 |
| Coils | Coil | Coil | 917 | 946 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_004247127.1 | ABC transporter C family member 5 [Solanum lycopersicum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BME7 | ABC-type xenobiotic transporter OS=Solanum chilense OX=4083 GN=EJD97_006832 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology