Basic Information
Locus ID:
SOLCI001952400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1980 | 100738 | 106222 | + | SOLCI001952400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 92,057.95 Da | 62.27 | 64.62 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 755 | 793 | 1.11618E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 753 | 798 | 6.1E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 741 | 806 | 4.3E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 755 | 793 | 9.907503 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 300 | - | - |
| Coils | Coil | Coil | 681 | 701 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_010313314.1 | uncharacterized protein LOC101264699 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2BXL1 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006825 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology