Basic Information
Locus ID:
SOLCI001952200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1980 | 66049 | 74068 | - | SOLCI001952200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 116,768.58 Da | 42.16 | 77.23 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 703 | 743 | 1.45943E-20 | - |
| Pfam | PF16135 | Tify domain binding domain | 472 | 527 | 2.2E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 637 | 687 | 1.6E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 783 | 845 | 5.54E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 685 | 745 | 6.58E-16 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 946 | 1047 | 2.29E-5 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 889 | 1058 | 4.8E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 850 | 3.3E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 688 | 775 | 1.3E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 791 | 848 | 1.4E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 703 | 744 | 3.7E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 789 | 850 | 8.7513 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 701 | 746 | 10.317699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 704 | 743 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 598 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_025884128.1 | uncharacterized protein LOC101264398 isoform X1 [Solanum lycopersicum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BMF7 | PHD-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006824 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology