Basic Information
Locus ID:
SOLCI001911000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1959 | 13710 | 18845 | - | SOLCI001911000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 86,335.99 Da | 45.91 | 75.14 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 120 | 177 | 3.7E-13 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 244 | 390 | 2.0E-53 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 433 | 657 | 1.1E-75 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 449 | 623 | 4.9E-200 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 242 | 660 | 4.9E-200 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | 8.61564 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | 9.065053 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 724 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_004242933.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Solanum lycopersicum] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BVJ9 | ribonuclease P OS=Solanum chilense OX=4083 GN=EJD97_006643 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology