Basic Information
Locus ID:
SOLCI001897900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hippocampus abundant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold19485 | 181 | 4053 | - | SOLCI001897900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 44,827.19 Da | 43.43 | 115.81 | 0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 12 | 393 | 2.5287E-43 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 12 | 383 | 1.9E-21 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 12 | 413 | 2.62E-31 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 9 | 415 | 7.6E-34 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 8 | 418 | 10.058868 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 367 | 390 | 1.2E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 307 | 328 | 1.2E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 58 | 74 | 1.2E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 332 | 352 | 1.2E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_027768122.1 | hippocampus abundant transcript-like protein 1 [Solanum pennellii] | 0 |
| A4IF94 | Hippocampus abundant transcript-like protein 1 OS=Bos taurus OX=9913 GN=MFSD14B PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AKD8 | MFS domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006603 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology