Basic Information
Locus ID:
SOLCI001894000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
EBF1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1946 | 61972 | 63972 | - | SOLCI001894000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 71,341.16 Da | 44.17 | 107.42 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 584 | 603 | 0.0021 | IPR001611 |
| Pfam | PF00646 | F-box domain | 60 | 104 | 1.8E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 501 | 523 | 0.18 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 289 | 311 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 197 | 438 | 1.69E-35 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 328 | 665 | 4.71E-30 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 58 | 98 | 1.83E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 62 | 96 | 1.4E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 159 | 261 | 9.8E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 469 | 666 | 3.4E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 262 | 468 | 3.2E-39 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 5.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 528 | 553 | 3.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 555 | 580 | 7.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 369 | 394 | 0.081 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 237 | 262 | 7.3E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 421 | 446 | 67.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 607 | 632 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 526 | 0.02 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 289 | 314 | 6.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 263 | 288 | 0.0012 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 395 | 420 | 6.9E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 0.062 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 581 | 605 | 0.0063 | IPR006553 |
| Coils | Coil | Coil | 664 | 666 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | NP_001293065.1 | EIN3-binding F-box protein 2 [Solanum lycopersicum] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BVL5 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006592 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology