halophFGD

Basic Information

Locus ID: SOLCI001877000

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: DNA-directed RNA polymerase III subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold1937	12380	12841	+	SOLCI001877000

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.21	16,686.33 Da	36.05	93.53	0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05158	RNA polymerase Rpc34 subunit	1	38	4.8E-9	IPR007832
Pfam	PF05158	RNA polymerase Rpc34 subunit	40	150	5.4E-11	IPR007832

Gene Ontology

Biological Process:

GO:0006383 (transcription by RNA polymerase III)

Cellular Component:

GO:0005666 (RNA polymerase III complex)

KEGG Pathway

KO Term:

K03025 (DNA-directed RNA polymerase III subunit RPC6)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G23710.1	DNA binding;DNA-directed RNA polymerases.
RefSeq	XP_004245997.1	DNA-directed RNA polymerase III subunit rpc6 [Solanum lycopersicum]
Swiss-Prot	Q86JM3	DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1
TrEMBL	A0A6N2BY40	DNA-directed RNA polymerase III subunit RPC6 OS=Solanum chilense OX=4083 GN=EJD97_006521 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg36957, jg5577
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19264, gene_622
Amaranthaceae	Beta vulgaris	1	BVRB_5g121860
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31325, Sbi_jg57961
Amaranthaceae	Salicornia europaea	1	Seu_jg25586
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004474
Amaranthaceae	Suaeda glauca	2	Sgl54529, Sgl59870
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... gene:ENSEOMG00000023247
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630
Anacardiaceae	Pistacia vera	1	pistato.v30127940
Apiaceae	Apium graveolens	2	Ag1G01146, Ag9G01580
Arecaceae	Cocos nucifera	2	scaffold010820G000020, scaffold012968G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103724044
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1360.V1.1
Asteraceae	Flaveria trinervia	1	Ftri14G23041
Brassicaceae	Arabidopsis thaliana	1	AT5G23710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005351m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g23520.v2.2
Brassicaceae	Brassica nigra	2	BniB02g076810.2N, BniB07g040580.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G0311
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g12140
Dunaliellaceae	Dunaliella salina	1	Dusal.0099s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g21500
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.463
Plantaginaceae	Plantago ovata	2	Pov_00003140, Pov_00013573
Poaceae	Echinochloa crus-galli	6	AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... CH06.2250
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_6BG0497900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0719600.1.CDS1 ... HORVU.MOREX.r3.7HG0719610.1.CDS1, HORVU.MOREX.r3.7HG0719640.1
Poaceae	Lolium multiflorum	1	gene-QYE76_034960
Poaceae	Oryza coarctata	1	Oco12G012520
Poaceae	Oryza sativa	1	LOC_Os06g40110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G184000, gene-BS78_10G184400
Poaceae	Sporobolus alterniflorus	3	Chr02G029820, Chr05G007490, Chr0G008060
Poaceae	Thinopyrum elongatum	2	Tel7E01G637700, Tel7E01G637800
Poaceae	Triticum dicoccoides	3	gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... gene_TRIDC7BG044960
Poaceae	Triticum aestivum	4	TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... TraesCS7B02G277600.1.cds1, TraesCS7D02G372500.1.cds1
Poaceae	Zea mays	3	Zm00001eb276730_P001, Zm00001eb356740_P001 ... Zm00001eb386260_P001
Poaceae	Zoysia japonica	1	nbis-gene-10090
Poaceae	Zoysia macrostachya	1	Zma_g30783
Portulacaceae	Portulaca oleracea	1	evm.TU.LG09.1261
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g03170, gene.Posoc05g03210
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1182
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14684, nbisL1-mrna-6818
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14849
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21751
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000004l.134
Rhizophoraceae	Kandelia obovata	1	Maker00004087
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16335
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-21384
Salicaceae	Populus euphratica	5	populus_peu04478, populus_peu04517, populus_peu04536 ... populus_peu12129, populus_peu35292
Solanaceae	Lycium barbarum	3	gene-LOC132602065, gene-LOC132610636, gene-LOC132621960
Solanaceae	Solanum chilense	1	SOLCI001877000
Solanaceae	Solanum pennellii	1	gene-LOC107026877
Tamaricaceae	Reaumuria soongarica	2	STRG.19266_chr07_-, gene_16144
Tamaricaceae	Tamarix chinensis	2	TC05G1029, TC09G0526
Zosteraceae	Zostera marina	1	Zosma05g05360.v3.1