Basic Information
Locus ID:
SOLCI001834700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1911 | 76782 | 80600 | + | SOLCI001834700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 88,097.33 Da | 61.47 | 66.02 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 714 | 753 | 2.62523E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 712 | 758 | 7.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 713 | 759 | 6.13E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 699 | 764 | 8.6E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 714 | 753 | 10.173057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 640 | 667 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_010322416.1 | uncharacterized protein LOC101261337 isoform X1 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2BYE6 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology