Basic Information
Locus ID:
SOLCI001828600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
RPL18
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold19096 | 2999 | 5369 | - | SOLCI001828600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.76 | 20,762.34 Da | 27.86 | 84.01 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 186 | 3.1E-94 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 20 | 139 | 1.44E-27 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 187 | 3.8E-100 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 187 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05590.1 | ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18. | 0 |
| RefSeq | XP_010313195.1 | 60S ribosomal protein L18-2 [Solanum lycopersicum] | 0 |
| P42791 | Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2ALE0 | Ribosomal_L18e/L15P domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006313 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology