HalophFGD

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Basic Information
Locus ID: SOLCI001819600
Species & Taxonomic ID: Solanum chilense & 4083
Genome Assembly: GCA_006013705.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
scaffold1904 32955 33911 - SOLCI001819600
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
4.58 36,152.00 Da 47.38 82.44 -0.33
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 4 42 1.3E-5 IPR001810
SUPERFAMILY SSF81383 F-box domain 4 71 3.4E-12 IPR036047
Gene3D G3DSA:1.20.1280.50 - 3 41 6.6E-7 -
SMART SM00256 fbox_2 3 42 6.7E-4 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G38870.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_015082163.1 F-box protein CPR1-like [Solanum pennellii] 0
Swiss-Prot Q9T0J4 Putative F-box protein At4g38870 OS=Arabidopsis thaliana OX=3702 GN=At4g38870 PE=4 SV=1 0
TrEMBL A0A6N2BNF1 F-box domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_006288 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Solanaceae Lycium barbarum 7 gene-LOC132601986, gene-LOC132601987, gene-LOC132603133 ...
gene-LOC132612653, gene-LOC132630050, gene-LOC132630200, gene-LOC132640303
Solanaceae Solanum chilense 6 SOLCI000005900, SOLCI001662300, SOLCI001819600 ...
SOLCI003371300, SOLCI003557000, SOLCI006041800
Solanaceae Solanum pennellii 4 gene-LOC107001609, gene-LOC107010212, gene-LOC107025894 ...
gene-LOC107031041
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.