Basic Information
Locus ID:
SOLCI001805700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1897 | 44999 | 46129 | - | SOLCI001805700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 37,704.51 Da | 69.62 | 63.60 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 26 | 115 | 3.6E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 23 | 115 | 1.18E-33 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 19 | 116 | 3.3E-37 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 22 | 115 | 1.5E-56 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 65 | 89 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 77 | 89 | 4.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 26 | 49 | 4.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 64 | 76 | 4.2E-20 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 163 | - | - |
| Coils | Coil | Coil | 185 | 212 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62020.1 | heat shock transcription factor B2A. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_015067295.1 | heat stress transcription factor B-2a [Solanum pennellii] | 0 |
| Q9SCW4 | Heat stress transcription factor B-2a OS=Arabidopsis thaliana OX=3702 GN=HSFB2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BQL5 | HSF_DOMAIN domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006232 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology