Basic Information
Locus ID:
SOLCI001805500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine-rich repeat receptor protein kinase exs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1897 | 30042 | 33869 | + | SOLCI001805500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 138,103.38 Da | 30.35 | 112.37 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1003 | 1272 | 1.11262E-103 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 731 | 750 | 0.32 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 67 | 2.3E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 999 | 1266 | 7.5E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 780 | 839 | 1.9E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 502 | 561 | 3.0E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 167 | 227 | 9.8E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 658 | 717 | 2.8E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 978 | 1269 | 2.43E-79 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 75 | 395 | 3.77E-58 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 340 | 595 | 2.86E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 610 | 889 | 1.13E-63 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 961 | 1072 | 4.4E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 337 | 1.3E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 600 | 899 | 1.1E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 338 | 484 | 2.4E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 485 | 599 | 2.1E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1073 | 1275 | 1.4E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 185 | 1.2E-41 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 93 | 119 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 656 | 682 | 330.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 500 | 526 | 410.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 165 | 195 | 230.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 728 | 751 | 490.0 | - |
| SMART | SM00220 | serkin_6 | 997 | 1269 | 4.5E-35 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 262 | 285 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 310 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 572 | 596 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 189 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 728 | 752 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 9.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 501 | 523 | 390.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 752 | 771 | 320.0 | - |
| SMART | SM00369 | LRR_typ_2 | 826 | 850 | 22.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 262 | 288 | 180.0 | - |
| SMART | SM00369 | LRR_typ_2 | 656 | 679 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 549 | 571 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 524 | 548 | 9.6 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 997 | 1275 | 39.523624 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 550 | 573 | 7.196008 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1003 | 1026 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1119 | 1131 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 141 | 154 | 9.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 96 | 109 | 9.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_004234442.1 | leucine-rich repeat receptor protein kinase EMS1 [Solanum lycopersicum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BNH4 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |