Basic Information
Locus ID:
SOLCI001796000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18903 | 1867 | 3054 | - | SOLCI001796000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 42,667.82 Da | 87.13 | 58.02 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 195 | 236 | 3.31344E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 3 | 35 | 3.8E-12 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 271 | 376 | 9.8E-39 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 195 | 236 | 4.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 241 | 4.2E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 242 | 4.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 195 | 235 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 195 | 236 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 81 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010319254.1 | probable E3 ubiquitin-protein ligase RHC2A [Solanum lycopersicum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AJ86 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_006194 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology