Basic Information
Locus ID:
SOLCI001789600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18872 | 535 | 3685 | - | SOLCI001789600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 67,033.62 Da | 42.37 | 96.30 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 340 | 594 | 1.1E-26 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 91 | 112 | 0.4 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 60 | 5.6E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 114 | 173 | 3.5E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 341 | 596 | 4.99E-49 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 209 | 2.95E-35 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 307 | 410 | 6.4E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 239 | 1.6E-18 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 413 | 604 | 1.2E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 135 | 8.1E-28 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 337 | 604 | 26.308334 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 343 | 365 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 0 |
| RefSeq | NP_001234580.2 | atypical receptor-like kinase 1 precursor [Solanum lycopersicum] | 0 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2ALJ2 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006147 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology