Basic Information
Locus ID:
SOLCI001785300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1885 | 964 | 3537 | + | SOLCI001785300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 95,033.49 Da | 44.22 | 67.83 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 129 | 179 | 8.16415E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 278 | 329 | 7.2E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 198 | 260 | 1.7E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 330 | 5.3E-15 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 830 | 855 | 4.32E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 267 | 2.86E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 207 | 4.82E-17 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 831 | 857 | 3.9E-7 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 803 | 830 | 2.7E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 256 | 502 | 7.1E-76 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 211 | 5.0E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 268 | 329 | 8.5E-5 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 198 | 260 | 1.7E-18 | IPR002867 |
| SMART | SM00547 | zf_4 | 805 | 829 | 0.0052 | IPR001876 |
| SMART | SM00547 | zf_4 | 832 | 856 | 6.9E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 830 | 857 | 9.190362 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 169 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 125 | 333 | 45.865974 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 834 | 853 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_004228962.1 | probable E3 ubiquitin-protein ligase ARI7 [Solanum lycopersicum] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BVZ7 | RBR-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_006119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626478 |
| Solanaceae | Solanum chilense | 1 | SOLCI001785300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008425 |