Basic Information
Locus ID:
SOLCI001770700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1878 | 45587 | 53148 | - | SOLCI001770700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 64,670.14 Da | 43.45 | 97.07 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 2.58114E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 344 | 7.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 386 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 298 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 513 | 0.056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 1.3E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 556 | 5.49E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 522 | 1.3E-59 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 579 | 1.2E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 5.3 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 8.0E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 2.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 8.0E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 388 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 301 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.695863 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 10.777044 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 523 | 9.205141 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015076344.1 | WD repeat-containing protein 26 homolog isoform X3 [Solanum pennellii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BU78 | Transducin family protein / WD-40 repeat family protein OS=Solanum chilense OX=4083 GN=EJD97_006063 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology