Basic Information
Locus ID:
SOLCI001749400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18650 | 19937 | 21178 | + | SOLCI001749400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 38,879.13 Da | 34.38 | 95.55 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 177 | 1.16723E-56 | - |
| Pfam | PF00190 | Cupin | 21 | 155 | 5.5E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 194 | 338 | 2.1E-18 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 21 | 347 | 9.66E-36 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 10 | 178 | 2.4E-28 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 198 | 362 | 2.7E-38 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 160 | 1.2E-13 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 194 | 344 | 3.6E-15 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 298 | 316 | 4.8E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 280 | 295 | 4.8E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 262 | 278 | 4.8E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 215 | 235 | 4.8E-8 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_015060659.1 | 13S globulin seed storage protein 2-like [Solanum pennellii] | 0 |
| O23878 | 13S globulin seed storage protein 1 OS=Fagopyrum esculentum OX=3617 GN=FA02 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AJF8 | Cupin type-1 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006003 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology