Basic Information
Locus ID:
SOLCI001735800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18586 | 3696 | 4922 | + | SOLCI001735800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 43,751.98 Da | 35.71 | 105.34 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 66 | 8.7E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 125 | 184 | 2.1E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 295 | 375 | 1.05E-6 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 23 | 278 | 4.22E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 387 | 8.8E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 190 | 7.2E-38 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 149 | 171 | 7.565642 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 126 | 139 | 4.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 147 | 160 | 4.8E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17640.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_004243659.1 | receptor protein-tyrosine kinase CEPR1 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2AL25 | LRRNT_2 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_005951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology