Basic Information
Locus ID:
SOLCI001721600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1852 | 17653 | 29693 | + | SOLCI001721600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 149,476.91 Da | 56.30 | 68.23 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 689 | 728 | 3.39787E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 611 | 661 | 1.6E-20 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 689 | 731 | 7.9E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 878 | 947 | 1.82E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 679 | 733 | 8.42E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 675 | 743 | 3.7E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 688 | 729 | 1.5E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 730 | 788 | 3.9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 686 | 731 | 10.202 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1086 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1339 | 1353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1329 | 1365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1086 | 1127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1211 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1253 | 1277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 139 | - | - |
| Coils | Coil | Coil | 1140 | 1160 | - | - |
| Coils | Coil | Coil | 442 | 462 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_015088198.1 | uncharacterized protein LOC107031373 [Solanum pennellii] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BR26 | PHD-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_005875 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology