Basic Information
Locus ID:
SOLCI001721400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18516 | 1391 | 4299 | - | SOLCI001721400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 72,289.78 Da | 38.21 | 95.10 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 390 | 650 | 1.11909E-94 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 75 | 3.0E-7 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 388 | 649 | 6.2E-38 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 363 | 649 | 8.08E-57 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 218 | 1.21E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 154 | 237 | 1.7E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 153 | 4.7E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 464 | 656 | 1.1E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 360 | 462 | 3.7E-25 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 384 | 654 | 29.460215 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 277 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015062610.1 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 [Solanum pennellii] | 0 |
| Q9C660 | Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana OX=3702 GN=PERK10 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2AMS4 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_005873 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology