Basic Information
Locus ID:
SOLCI001714700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1848 | 52311 | 65594 | - | SOLCI001714700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 48,488.71 Da | 65.34 | 83.27 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 233 | 276 | 1.21186E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 10 | 163 | 1.94373E-53 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 233 | 276 | 1.1E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 77 | 141 | 3.7E-10 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 284 | 2.78E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 151 | 8.63E-10 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 156 | 1.9E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 281 | 2.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 234 | 275 | 5.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 276 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 352 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_004250405.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Solanum lycopersicum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BW98 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_005851 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology