Basic Information
Locus ID:
SOLCI001707100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18438 | 3520 | 4323 | - | SOLCI001707100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 29,917.21 Da | 49.95 | 88.02 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 48 | 76 | 9.7E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 106 | 1.3E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 139 | 2.4E-11 | IPR013083 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 66 | 75 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015064443.1 | E3 ubiquitin-protein ligase RNF182-like [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2AL86 | zf-RING_UBOX domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_005815 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology