Basic Information
Locus ID:
SOLCI001649000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1818 | 53339 | 58537 | - | SOLCI001649000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 47,201.74 Da | 41.74 | 83.89 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 328 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 79 | 330 | 1.37E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 78 | 407 | 6.6E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 328 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 65 | 105 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 0.013 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_004230220.1 | autophagy-related protein 18a [Solanum lycopersicum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BU74 | Autophagy-related protein 18a OS=Solanum chilense OX=4083 GN=EJD97_005577 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology