Basic Information
Locus ID:
SOLCI001635100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1812 | 928 | 42054 | + | SOLCI001635100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 79,914.48 Da | 40.62 | 86.83 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 1.18613E-131 | - |
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 3.95271E-71 | - |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 6.7E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 311 | 407 | 1.7E-15 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 604 | 665 | 1.1E-9 | IPR002121 |
| Pfam | PF09382 | RQC domain | 481 | 584 | 1.1E-4 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 260 | 2.9E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 422 | 1.39E-57 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 597 | 672 | 3.27E-7 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 582 | 2.3E-25 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 599 | 668 | 6.6E-13 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 477 | 2.9E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 47 | 280 | 6.9E-90 | IPR027417 |
| SMART | SM00956 | RQC_2 | 485 | 582 | 0.007 | IPR018982 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 1.6E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 8.9E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 508 | 9.0E-163 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 22.907835 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 450 | 20.298431 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 596 | 675 | 14.804932 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 603 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
| Coils | Coil | Coil | 592 | 612 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_015085784.1 | mediator of RNA polymerase II transcription subunit 34 isoform X2 [Solanum pennellii] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BS84 | ATP-dependent DNA helicase OS=Solanum chilense OX=4083 GN=EJD97_005505 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology