Basic Information
Locus ID:
SOLCI001632700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18107 | 727 | 7124 | + | SOLCI001632700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 44,563.58 Da | 46.61 | 73.56 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 132 | 206 | 1.7292E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 48 | 118 | 2.64994E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 252 | 326 | 2.82681E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | 5.4E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | 1.1E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 320 | 3.8E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 243 | 327 | 4.57E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 124 | 214 | 5.24E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 35 | 124 | 4.84E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 230 | 329 | 1.4E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 39 | 124 | 1.0E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 125 | 223 | 4.1E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 253 | 322 | 5.4E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 132 | 205 | 1.2E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 47 | 116 | 5.6E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | 15.238032 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | 17.216459 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | 14.794592 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 248 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_004243695.1 | oligouridylate-binding protein 1 [Solanum lycopersicum] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AJB5 | Oligouridylate-binding protein 1-like OS=Solanum chilense OX=4083 GN=EJD97_005501 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology