Basic Information
Locus ID:
SOLCI001621200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold18030 | 5015 | 6289 | + | SOLCI001621200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 47,434.15 Da | 71.90 | 69.72 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 127 | 170 | 1.50788E-18 | - |
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 3.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 175 | 4.8E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 176 | 4.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 8.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 392 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004242728.1 | RING-H2 finger protein ATL43 [Solanum lycopersicum] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2AK38 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_005466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology