Basic Information
Locus ID:
SOLCI001556500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold177 | 1176 | 16181 | + | SOLCI001556500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 107,161.95 Da | 47.85 | 83.14 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 775 | 928 | 2.82644E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 304 | 927 | 1.1E-84 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 24 | 129 | 2.2E-23 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 302 | 930 | 1.96E-107 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 2 | 129 | 2.35E-26 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 724 | 938 | 5.9E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 142 | 227 | 3.6E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 1 | 141 | 2.0E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 291 | 545 | 2.1E-65 | - |
| SMART | SM00695 | dusp | 20 | 131 | 3.6E-31 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 1 | 128 | 17.926289 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 304 | 930 | 55.395741 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 305 | 320 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 872 | 889 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 289 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_004246244.1 | ubiquitin carboxyl-terminal hydrolase 5 [Solanum lycopersicum] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2CHP0 | Ubiquitin carboxyl-terminal hydrolase OS=Solanum chilense OX=4083 GN=EJD97_005252 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology