Basic Information
Locus ID:
SOLCI001532800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
PDC3
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1758 | 63694 | 66033 | - | SOLCI001532800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 65,162.76 Da | 27.27 | 91.18 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 401 | 583 | 5.29E-89 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 42 | 201 | 2.08538E-88 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 236 | 353 | 1.5E-22 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 39 | 205 | 2.5E-33 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 446 | 570 | 3.3E-15 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 39 | 213 | 8.52E-42 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 403 | 595 | 1.44E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 225 | 379 | 2.62E-34 | IPR029035 |
| Gene3D | G3DSA:3.40.50.1220 | - | 226 | 388 | 1.1E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 36 | 211 | 2.1E-59 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 395 | 582 | 1.6E-56 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 34 | 595 | 1.3E-208 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_004246778.1 | pyruvate decarboxylase 1 [Solanum lycopersicum] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BT50 | pyruvate decarboxylase OS=Solanum chilense OX=4083 GN=EJD97_005130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology