Basic Information
Locus ID:
SOLCI001455200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1708 | 1417 | 3581 | + | SOLCI001455200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 51,960.79 Da | 46.26 | 79.16 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 113 | 428 | 1.0E-90 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 76 | 463 | 1.8E-126 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 63 | 456 | 1.7E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 350 | 371 | 5100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 291 | 311 | 10000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 268 | 289 | 9.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 321 | 342 | 0.55 | IPR006626 |
| SMART | SM00710 | pbh1 | 241 | 267 | 810.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 298 | 311 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_004230341.1 | polygalacturonase At1g48100 isoform X2 [Solanum lycopersicum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BSG2 | Polygalacturonase OS=Solanum chilense OX=4083 GN=EJD97_004908 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology