Basic Information
Locus ID:
SOLCI001430500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1693 | 41975 | 50053 | + | SOLCI001430500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 113,244.38 Da | 37.44 | 82.10 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 322 | 1.42808E-174 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 819 | 7.0E-52 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 455 | 2.6E-18 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1006 | 3.1E-12 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 358 | 2.5E-92 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 33 | 360 | 2.49E-110 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 470 | 1009 | 3.92E-147 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 362 | 457 | 2.52E-26 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 584 | 2.6E-24 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 888 | 1009 | 3.6E-33 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 867 | 1.1E-99 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 326 | 1.0E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 327 | 404 | 2.5E-31 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 405 | 461 | 8.8E-21 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 7.6E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_004232502.1 | alpha-mannosidase isoform X2 [Solanum lycopersicum] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BS33 | Alpha-mannosidase OS=Solanum chilense OX=4083 GN=EJD97_004794 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology