Basic Information
Locus ID:
SOLCI001427900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold16903 | 5090 | 7305 | - | SOLCI001427900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 41,943.48 Da | 29.97 | 76.78 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 24 | 361 | 4.43253E-138 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 355 | 9.3E-77 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 30 | 364 | 1.05E-62 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 258 | 326 | 1.57E-13 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 257 | 326 | 6.9E-121 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 42 | 355 | 6.9E-121 | - |
| SMART | SM00636 | 2g34 | 26 | 355 | 4.9E-100 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 26 | 371 | 66.865715 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_004242562.1 | class V chitinase [Solanum lycopersicum] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AKJ2 | GH18 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004783 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology