Basic Information
Locus ID:
SOLCI001415200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1683 | 54696 | 57584 | + | SOLCI001415200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 67,345.28 Da | 43.37 | 89.01 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 25 | 131 | 3.3E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 210 | 472 | 1.2E-91 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 19 | 116 | 2.12E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 147 | 2.3E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 135 | 9.2E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 496 | 91.840942 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 99 | 11.584966 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 597 | - | - |
| Coils | Coil | Coil | 536 | 563 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_019071165.2 | BTB/POZ domain-containing protein At5g03250-like [Solanum lycopersicum] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BVS0 | NPH3 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology