Basic Information
Locus ID:
SOLCI001406800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1677 | 159421 | 166572 | + | SOLCI001406800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 42,364.49 Da | 36.36 | 94.48 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 153 | 231 | 4.8E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 49 | 347 | 4.47E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 43 | 355 | 4.0E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 178 | 215 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 174 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 349 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 7.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 347 | 8.703868 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004243544.1 | SEC12-like protein 2 [Solanum lycopersicum] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A6N2BS71 | ANAPC4_WD40 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004727 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology